Genera
- Dimargaritales
- Dimargaris
- Dispira
- Tieghemiomyces
- Endogonales
- Endogone
- Peridiospora
- Sclerogone
- Youngiomyces
- Kickxellales
- Coemansia
- Dipsacomyces
- Kickxella
- Linderina
- Martensella
- Martensiomyces
- Mycoëmilia
- Myconymphaea
- Pinnaticoemansia
- Ramicandelaber
- Spirodactylon
- Spiromyces
- Mortierellales
- Aquamortierella
- Dissophora
- Gamsiella
- Lobosporangium
- Modicella
- Mortierella
- Mucorales
- Absidia
- Actinomucor
- Amylomyces
- Apophysomyces
- Backusella
- Benjaminiella
- Blakeslea
- Chaetocladium
- Chlamydoabsidia
- Choanephora
- Circinella
- Circinomucor
- Cokeromyces
- Cunninghamella
- Dicanophora
- Dichotomocladium
- Ellisomyces
- Fennellomyces
- Gilbertella
- Gongronella
- Halteromyces
- Helicostylum
- Hesseltinella
- Hyphomucor
- Kirkomyces
- Lentamyces
- Lichtheimia
- Mucor
- Mycocladus
- Mycotypha
- Parasitella
- Phascolomyces
- Phycomyces
- Pilaira
- Pilobolus
- Pirella
- Poitrasia
- Protomycocladus
- Radiomyces
- Rhizomucor
- Rhizopodopsis
- Rhizopus
- Saksenaea
- Siepmannia
- Spinellus
- Sporodiniella
- Syncephalastrum
- Syzygites
- Thamnidium
- Thamnostylum
- Thermomucor
- Umbelopsis
- Utharomyces
- Zychaea
- Zygorhynchus
- Zoopagales
- Acaulopage
- Amoebophilus
- Aplectosoma
- Bdellospora
- Brachymyces
- Cochlonema
- Cystopage
- Endocochlus
- Euryancale
- Helicocephalum
- Kuzuhaea
- Piptocephalis
- Reticulocephalis
- Rhopalomyces
- Sigmoideomyces
- Stylopage
- Syncephalis
- Thamnocephalis
- Zoopage
- Zoophagus